Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_5458429_5458861_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

5458429 - 5458861

Intron Length:

433

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

AAG|GTATAACAT

5'SS Class:

major

3'SS Sequence:

CACTTCTTTGCAG|G

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

ATCTAAT

U12 Branch Point Sequence:

ATCTCCACAATC

Flanking Amino Acid:

RVVIERIARKGEQCNIVPDN

Intron Amino Acid Position:

407

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

73.6

0.56

66.7

38.5

Major BPS

85.7

0.89

0.8

22.2

Major PPT

82.1

0.72

0.8

76.3

31.8

Minor 5ss

39.1

-1.2

3.2

48.1

Minor BPS

53.2

0.08

1.8

66.13

39.6

Associated Gene:

Gene:

SPON1

Ensembl Gene ID:

ENSAPLG00000006849

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000010246

5444213 - 5633863

189651

ENSAPLT00000007124

5451750 - 5633863

182114