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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_545918_546691_R

Intron Information:

Intron Rank:
11
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
545918 - 546691
Intron Length:
774

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAATTATA
5'SS Class:
strong_major
3'SS Sequence:
ATTACATTACTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTAAT
U12 Branch Point Sequence:
ATTACATTACTA
Flanking Amino Acid:
FLTPDSFEQKVLNVSFAFEL
Intron Amino Acid Position:
324

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88.7
0.91
0.9
89
24.5
Major BPS
94.5
1.11
0.6
92.2
14.6
Major PPT
64.6
0.33
1
56.9
42.8
Minor 5ss
39.4
-1.2
2.8
51.5
45
Minor BPS
52.1
0.06
1.9
67.83
38.5

Associated Gene:

Gene:
PARVA
Ensembl Gene ID:
ENSAPLG00000016301
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000017020
542895 - 604188
61294