About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_54626077_54702248_F

Intron Information:

Intron Rank:
133961
Intron Class:
major
Intron Phase:
Intron Coordinates:
54626077 - 54702248
Intron Length:
76172

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AGG|GTATGTAAT
5'SS Class:
strong_major
3'SS Sequence:
GACTGTCTTTCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTTCAT
U12 Branch Point Sequence:
ATTTCATGATTT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.1
0.73
1
79.7
35.4
Major BPS
91.2
1.02
0.7
91.7
20.2
Major PPT
74.1
0.54
0.9
69.4
41.4
Minor 5ss
43
-0.8
2.6
51.2
45.5
Minor BPS
52
0.14
2
76.82
39.5

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000022028
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000022142
54619767 - 54702497
82731