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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_546794_548622_R

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
546794 - 548622
Intron Length:
1829

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAGGATTT
5'SS Class:
strong_major
3'SS Sequence:
ATCTTTTCTACAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AATATAT
U12 Branch Point Sequence:
TATTCAGAAAAT
Flanking Amino Acid:
NLEVTELETQFADGVYLVLL
Intron Amino Acid Position:
290

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.3
0.81
0.9
81.6
33.2
Major BPS
62.6
0.31
1
59.1
37.6
Major PPT
85.7
0.8
0.7
80.4
31.1
Minor 5ss
42.5
-0.8
3.4
64.3
47.2
Minor BPS
44.7
-0.3
2.5
71.75
44.5

Associated Gene:

Gene:
PARVA
Ensembl Gene ID:
ENSAPLG00000016301
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000017020
542895 - 604188
61294