Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_54754376_54755397_F

Intron Information:

Intron Rank:

145829

Intron Class:

major

Intron Phase:

Intron Coordinates:

54754376 - 54755397

Intron Length:

1022

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

ACA|GTGAGTCAT

5'SS Class:

major

3'SS Sequence:

TTTTTCCTCCCAG|G

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

TTATAAT

U12 Branch Point Sequence:

AATATTATAATC

Flanking Amino Acid:

Intron Amino Acid Position:

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

72.3

0.53

68.1

38.6

Major BPS

87.8

0.94

0.9

86.6

28.1

Major PPT

88.3

0.86

0.7

81.3

30.7

Minor 5ss

32.6

-2

46.8

42.6

Minor BPS

49.4

-0

1.5

59.19

33.3

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000028587

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000037634

54753555 - 54756043

2489