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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_54765766_54772828_F

Intron Information:

Intron Rank:
143497
Intron Class:
major
Intron Phase:
Intron Coordinates:
54765766 - 54772828
Intron Length:
7063

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGGGTT
5'SS Class:
strong_major
3'SS Sequence:
GCTCAACCTACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTTAC
U12 Branch Point Sequence:
GTTTGCTCAACC
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
92.1
0.99
0.8
86
30.3
Major BPS
86.6
0.91
0.8
77.7
36.7
Major PPT
67.6
0.4
0.9
58.3
37.2
Minor 5ss
35.2
-1.7
3.8
55
49.2
Minor BPS
61.7
0.35
2
75.68
40.5

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000027312
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000044902
54765744 - 54774875
9132