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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_54773227_54774800_F

Intron Information:

Intron Rank:
143498
Intron Class:
major
Intron Phase:
Intron Coordinates:
54773227 - 54774800
Intron Length:
1574

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TTG|GTGAGTGCA
5'SS Class:
strong_major
3'SS Sequence:
TGTACTTTCACAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TACAGAT
U12 Branch Point Sequence:
TTTTCCTACATT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.4
0.79
0.9
72.9
31.3
Major BPS
66.3
0.41
1
61
37.5
Major PPT
78.1
0.63
0.9
72.1
37.8
Minor 5ss
27.7
-2.6
3
29.3
37
Minor BPS
63.9
0.52
2.1
87.41
38.9

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000027312
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000044902
54765744 - 54774875
9132