Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_54812364_54812513_R

Intron Information:

Intron Rank:

150779

Intron Class:

major

Intron Phase:

Intron Coordinates:

54812364 - 54812513

Intron Length:

150

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

ACA|GTAAGGCAT

5'SS Class:

major

3'SS Sequence:

TCTCTTCACACAG|A

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TCTTCAC

U12 Branch Point Sequence:

TTTCTCTTCACA

Flanking Amino Acid:

Intron Amino Acid Position:

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

70.3

0.48

1.1

63.6

42.3

Major BPS

77.5

0.68

79.6

Major PPT

77.1

0.61

0.8

72.5

31.2

Minor 5ss

34.6

-1.7

3.5

53.1

44.8

Minor BPS

67.6

0.55

1.7

80.35

35.4

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000028622

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000031142

54810065 - 54812833

2769