About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_54848235_54850708_R

Intron Information:

Intron Rank:
2
Intron Class:
minor-like
Intron Phase:
1
Intron Coordinates:
54848235 - 54850708
Intron Length:
2474

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TGT|GTGTCTTGT
5'SS Class:
weak_minor
3'SS Sequence:
TTGTGGCACGAAG|G
3'SS Class:
degenerate_minor
U2 Branch Point Sequence:
ACTTCAC
U12 Branch Point Sequence:
GGCCACTTCACG
Flanking Amino Acid:
TGFADRYKLLWLQGSLAWPS
Intron Amino Acid Position:
21

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
49.6
-0
1.2
51.4
42.1
Major BPS
68.7
0.46
1
71.3
34
Major PPT
53.4
0.08
1.2
53.2
41
Minor 5ss
50.4
0.02
2.5
66.5
44.9
Minor BPS
45.3
-0.5
2
47.57
44.8

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000029098
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000048034
54847951 - 54850799
2849