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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_549446_550804_R

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
549446 - 550804
Intron Length:
1359

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ACG|GTAAGTTCA
5'SS Class:
strong_major
3'SS Sequence:
TGATTTTTTTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTAACAT
U12 Branch Point Sequence:
GGTACATTAACA
Flanking Amino Acid:
GNTEAFSGRHERDAFDTLFD
Intron Amino Acid Position:
246

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.1
0.87
0.9
78
32.6
Major BPS
71
0.52
1.1
77.7
35.3
Major PPT
86.5
0.82
0.8
84.8
35.6
Minor 5ss
41
-1
2.7
51.5
44.9
Minor BPS
63.6
0.42
1.7
71.72
39.3

Associated Gene:

Gene:
PARVA
Ensembl Gene ID:
ENSAPLG00000016301
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000017020
542895 - 604188
61294