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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_55054203_55056475_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
55054203 - 55056475
Intron Length:
2273

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAGGTCAG
5'SS Class:
strong_major
3'SS Sequence:
TTTGCTTCTCTAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTGTCAT
U12 Branch Point Sequence:
TATTTGTCATTT
Flanking Amino Acid:
AFYDQFAIAQFGLWAAWLTW
Intron Amino Acid Position:
174

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.7
0.79
1
68.8
43.8
Major BPS
84.8
0.86
1.1
85.7
34.9
Major PPT
81.3
0.7
0.8
74.1
36.7
Minor 5ss
32.2
-2
3.1
40
46.1
Minor BPS
45
-0.3
2.3
68.67
42.7

Associated Gene:

Gene:
TMEM179
Ensembl Gene ID:
ENSAPLG00000007213
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007482
55053563 - 55064573
11011