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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_55056555_55058048_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
55056555 - 55058048
Intron Length:
1494

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAG|GTTAGTATT
5'SS Class:
strong_major
3'SS Sequence:
CTTTCCTTGGTAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AAATAAC
U12 Branch Point Sequence:
TCCCCTCCAAAT
Flanking Amino Acid:
AITEKGSMPNSCEELQDIDL
Intron Amino Acid Position:
147

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.6
0.89
1
92
25
Major BPS
61.3
0.28
1
62
30.6
Major PPT
75.4
0.57
0.9
73.2
31.6
Minor 5ss
38
-1.4
2.8
51.9
44.6
Minor BPS
44
-0.3
1.9
59.56
43.6

Associated Gene:

Gene:
TMEM179
Ensembl Gene ID:
ENSAPLG00000007213
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007482
55053563 - 55064573
11011