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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_55058187_55064271_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
55058187 - 55064271
Intron Length:
6085

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GGA|GTAAGTACC
5'SS Class:
major
3'SS Sequence:
CCTTTTATTGCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CTTTTAT
U12 Branch Point Sequence:
TTCCCTTTTATT
Flanking Amino Acid:
TLFFLCKGHEDSFFYAFLNL
Intron Amino Acid Position:
101

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76.8
0.63
1
72.6
37.3
Major BPS
84.1
0.85
0.9
75.3
39.4
Major PPT
85.8
0.81
0.8
80.8
29.6
Minor 5ss
38.3
-1.3
2.7
43.9
37
Minor BPS
61
0.43
1.6
77.02
39.8

Associated Gene:

Gene:
TMEM179
Ensembl Gene ID:
ENSAPLG00000007213
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007482
55053563 - 55064573
11011