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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_55070088_55091076_R

Intron Information:

Intron Rank:
145191
Intron Class:
major-like
Intron Phase:
Intron Coordinates:
55070088 - 55091076
Intron Length:
20989

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAACAAC
5'SS Class:
strong_major
3'SS Sequence:
GCCTAGAATATAG|A
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
CTAGAAT
U12 Branch Point Sequence:
TCTGCCTAGAAT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.2
0.73
1
74.7
35.6
Major BPS
50.5
0.01
1.5
61.7
41.5
Major PPT
55
0.11
1
46.9
39.3
Minor 5ss
39
-1.2
3
51.2
45.7
Minor BPS
50.9
0.11
2
71.8
45.4

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000025544
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000030942
55069897 - 55091081
21185