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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_550825_551876_R

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
550825 - 551876
Intron Length:
1052

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TGA|GTATGTCAA
5'SS Class:
major
3'SS Sequence:
TTTTTCTCCTTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATGTAAA
U12 Branch Point Sequence:
TATATGTAAACT
Flanking Amino Acid:
QIQEEITGNTEAFSGRHERD
Intron Amino Acid Position:
239

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
67.2
0.41
1.1
60.5
40.1
Major BPS
66.4
0.41
1.1
67.7
36.5
Major PPT
85.6
0.8
0.6
85.7
21.5
Minor 5ss
40.9
-1
2.8
45.7
43.6
Minor BPS
48.3
-0
2.3
73.25
43.6

Associated Gene:

Gene:
PARVA
Ensembl Gene ID:
ENSAPLG00000016301
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000017020
542895 - 604188
61294