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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_55091185_55136443_R

Intron Information:

Intron Rank:
145192
Intron Class:
major-like
Intron Phase:
Intron Coordinates:
55091185 - 55136443
Intron Length:
45259

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TTG|GTAAGTCAA
5'SS Class:
strong_major
3'SS Sequence:
TTGATCTGGAAAG|G
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
AACTCAT
U12 Branch Point Sequence:
TTTGCCTTGATC
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.3
0.88
0.9
75.9
35.2
Major BPS
78.3
0.7
0.8
77.7
26.1
Major PPT
53.1
0.07
1.3
55.7
43.8
Minor 5ss
33.7
-1.9
2.9
38
41
Minor BPS
75.6
0.79
1.3
81.45
33.4

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000025544
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000037190
55090989 - 55136597
45609