About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_55150005_55156388_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
5UTR
Intron Coordinates:
55150005 - 55156388
Intron Length:
6384

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAGGGATT
5'SS Class:
strong_major
3'SS Sequence:
CTTTCCCTTTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TCTAAAT
U12 Branch Point Sequence:
AACCTCTCACTT
Flanking Amino Acid:
5UTR
Intron Amino Acid Position:
5UTR

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.8
0.8
1
82.5
37
Major BPS
69.8
0.49
1.1
75.5
35.2
Major PPT
87.6
0.85
0.6
85
22.6
Minor 5ss
36.8
-1.5
3.6
56.4
48
Minor BPS
45
-0.3
1.7
56.68
40.1

Associated Gene:

Gene:
INF2
Ensembl Gene ID:
ENSAPLG00000015886
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000016616
55149226 - 55169282
20057