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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_55158272_55158803_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
55158272 - 55158803
Intron Length:
532

Sequence Information:

Terminal Dinucleotides:
GC-AG
5'SS Sequence:
AAG|GCAAGTCTT
5'SS Class:
strong_major
3'SS Sequence:
GTGTTATTAACAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTGAA
U12 Branch Point Sequence:
GTGTTATTAACA
Flanking Amino Acid:
LALDALDHYKSVKNQQYRFS
Intron Amino Acid Position:
172

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
98.8
1.15
0.7
91.8
25.6
Major BPS
82.1
0.8
0.8
71.6
36.4
Major PPT
71.6
0.49
1
66.5
43.2
Minor 5ss
29.8
-2.3
4.1
49.5
46.7
Minor BPS
65.7
0.49
1.6
73.03
38.6

Associated Gene:

Gene:
INF2
Ensembl Gene ID:
ENSAPLG00000015886
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000016616
55149226 - 55169282
20057