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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_55159496_55160511_F

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
55159496 - 55160511
Intron Length:
1016

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGGATC
5'SS Class:
strong_major
3'SS Sequence:
TGTAATATTGCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTGTAAT
U12 Branch Point Sequence:
AGTGCTGTAATA
Flanking Amino Acid:
LQLLDILDKLRDIEEEDLLI
Intron Amino Acid Position:
236

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
92.2
1
0.8
86
30.3
Major BPS
72.1
0.55
1.2
73.3
39.1
Major PPT
74.1
0.54
1
66.7
43.4
Minor 5ss
36.8
-1.5
3.3
51.2
45.7
Minor BPS
48.8
-0
2.1
61.75
39.2

Associated Gene:

Gene:
INF2
Ensembl Gene ID:
ENSAPLG00000015886
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000016616
55149226 - 55169282
20057