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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_55160654_55160768_F

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
55160654 - 55160768
Intron Length:
115

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAA|GTAAGTAGG
5'SS Class:
strong_major
3'SS Sequence:
CCGTGTCTTCCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTGAAA
U12 Branch Point Sequence:
CTTGCTGTGATT
Flanking Amino Acid:
HEVFSSLFNKVSRSPVSIQL
Intron Amino Acid Position:
284

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.6
0.82
0.9
75.5
40.6
Major BPS
56.6
0.17
1.3
67.7
36.5
Major PPT
74.6
0.55
0.9
64.9
41.3
Minor 5ss
36.8
-1.5
2.7
42.8
38.2
Minor BPS
48.3
-0
2.1
69.68
42.6

Associated Gene:

Gene:
INF2
Ensembl Gene ID:
ENSAPLG00000015886
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000016616
55149226 - 55169282
20057