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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_55160911_55161411_F

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
55160911 - 55161411
Intron Length:
501

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ACA|GTAAGAAAG
5'SS Class:
major
3'SS Sequence:
CCCATTTCTCTAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTCTGAC
U12 Branch Point Sequence:
CTTCTCTGACCC
Flanking Amino Acid:
VNRALLLANDIQGNTVEEVI
Intron Amino Acid Position:
331

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
72
0.52
1.1
65.7
40
Major BPS
69.1
0.47
1
60.7
37.6
Major PPT
73
0.52
0.8
65
36.3
Minor 5ss
35
-1.7
3
46.2
42.8
Minor BPS
50
-0
1.8
64.1
41.5

Associated Gene:

Gene:
INF2
Ensembl Gene ID:
ENSAPLG00000015886
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000016616
55149226 - 55169282
20057