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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_55163507_55164143_F

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
55163507 - 55164143
Intron Length:
637

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTAAGATAT
5'SS Class:
strong_major
3'SS Sequence:
CTCCTCCCTGCAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTTTGAC
U12 Branch Point Sequence:
GACTGCTTACTC
Flanking Amino Acid:
NLNIFLKQFKCSNEEVAAMV
Intron Amino Acid Position:
704

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.3
0.83
0.9
79.5
29.4
Major BPS
74.1
0.6
1
66.7
39.9
Major PPT
79.2
0.66
0.7
73.1
25.2
Minor 5ss
39.8
-1.1
3.2
53.2
45
Minor BPS
47.7
-0.2
2
55.71
43

Associated Gene:

Gene:
INF2
Ensembl Gene ID:
ENSAPLG00000015886
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000016616
55149226 - 55169282
20057