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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_55167503_55168145_F

Intron Information:

Intron Rank:
16
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
55167503 - 55168145
Intron Length:
643

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AGG|GTAAAATTG
5'SS Class:
major
3'SS Sequence:
TATGTGATTTCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTAACAT
U12 Branch Point Sequence:
ATAACGTGAATT
Flanking Amino Acid:
EDLEYVSKAAGINLDIIRSE
Intron Amino Acid Position:
884

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
72.7
0.54
1.1
65.8
40.9
Major BPS
71
0.52
1.1
77.7
35.3
Major PPT
75
0.56
1
70.6
44.1
Minor 5ss
40.5
-1.1
3.2
47.6
47.9
Minor BPS
48.3
-0
2.2
69.23
41.4

Associated Gene:

Gene:
INF2
Ensembl Gene ID:
ENSAPLG00000015886
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000016616
55149226 - 55169282
20057