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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_55172373_55173867_R

Intron Information:

Intron Rank:
134500
Intron Class:
major
Intron Phase:
Intron Coordinates:
55172373 - 55173867
Intron Length:
1495

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAGGTACT
5'SS Class:
strong_major
3'SS Sequence:
CATCTTTTTTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTACAT
U12 Branch Point Sequence:
TTCTTTTTACAT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88.1
0.9
0.9
84.4
33.5
Major BPS
82.7
0.81
0.9
89.3
26.1
Major PPT
86.3
0.82
0.7
84.2
30.3
Minor 5ss
37
-1.5
3.1
51.8
44.8
Minor BPS
57.9
0.33
1.7
75.95
41.3

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000019663
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000044017
55171855 - 55173938
2084