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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_55172373_55178488_R

Intron Information:

Intron Rank:
134498
Intron Class:
major
Intron Phase:
Intron Coordinates:
55172373 - 55178488
Intron Length:
6116

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAATGTTC
5'SS Class:
strong_major
3'SS Sequence:
CATCTTTTTTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTACAT
U12 Branch Point Sequence:
TTCTTTTTACAT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.2
0.73
1
75.8
34.6
Major BPS
82.7
0.81
0.9
89.3
26.1
Major PPT
86.3
0.82
0.7
84.2
30.3
Minor 5ss
41.4
-1
3.3
58.9
45.9
Minor BPS
57.9
0.33
1.7
75.95
41.3

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000019663
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000040507
55171855 - 55178615
6761