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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_551936_557405_R

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
551936 - 557405
Intron Length:
5470

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGAGAG
5'SS Class:
strong_major
3'SS Sequence:
TATTTTTTTCCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTTAT
U12 Branch Point Sequence:
ACTTTTTTATTT
Flanking Amino Acid:
HVSIQVVVVQKREGILQSRQ
Intron Amino Acid Position:
220

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
89.9
0.94
0.8
75.1
35.1
Major BPS
96.5
1.15
0.6
86
34.2
Major PPT
91.8
0.94
0.7
84.8
35.4
Minor 5ss
29.8
-2.3
3.3
37.5
47.2
Minor BPS
59.7
0.38
1.5
72.97
39.1

Associated Gene:

Gene:
PARVA
Ensembl Gene ID:
ENSAPLG00000016301
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000017020
542895 - 604188
61294