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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_55214435_55227582_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
55214435 - 55227582
Intron Length:
13148

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGGGTCCC
5'SS Class:
major
3'SS Sequence:
CTTTCTGTTCCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AACTAAC
U12 Branch Point Sequence:
TATAGGGTAACT
Flanking Amino Acid:
TESDVVCRCQGGNNAGHTVV
Intron Amino Acid Position:
339

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.7
0.7
1
65.8
40.2
Major BPS
68
0.45
0.9
67.6
25.3
Major PPT
84.4
0.77
0.8
76.5
37.6
Minor 5ss
28.6
-2.4
3
35.8
41
Minor BPS
42.3
-0.5
2.8
69.59
46.9

Associated Gene:

Gene:
ADSS1
Ensembl Gene ID:
ENSAPLG00000027680
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000030819
55213421 - 55239954
26534