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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_55227686_55229127_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
55227686 - 55229127
Intron Length:
1442

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TTG|GTAAGACAA
5'SS Class:
strong_major
3'SS Sequence:
TGTGTTCCCAAAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTTTAT
U12 Branch Point Sequence:
CTTGCTTTAAAA
Flanking Amino Acid:
IINPKAISFIGNGVVIHLPG
Intron Amino Acid Position:
373

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.3
0.76
0.9
69.6
36.5
Major BPS
87.7
0.94
0.8
77.7
36.7
Major PPT
64.1
0.32
1.1
63.8
37.3
Minor 5ss
31.4
-2.1
3.1
36.2
41.7
Minor BPS
65.1
0.47
1.5
71.99
40.5

Associated Gene:

Gene:
ADSS1
Ensembl Gene ID:
ENSAPLG00000027680
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000030819
55213421 - 55239954
26534