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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_55231673_55232029_F

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
55231673 - 55232029
Intron Length:
357

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTACAACTA
5'SS Class:
major
3'SS Sequence:
AAATATTTTACAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTAAA
U12 Branch Point Sequence:
TCTTCATTGATA
Flanking Amino Acid:
LLSDFDEFSSRFKNLAQQYK
Intron Amino Acid Position:
469

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
72.2
0.52
1.1
65.2
40.7
Major BPS
85.3
0.88
0.8
84.2
21.8
Major PPT
73.5
0.53
1
65.7
44.1
Minor 5ss
33.8
-1.8
3.5
47.8
47.6
Minor BPS
66.7
0.52
1.6
75.33
36.1

Associated Gene:

Gene:
ADSS1
Ensembl Gene ID:
ENSAPLG00000027680
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000030819
55213421 - 55239954
26534