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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_55233227_55234443_F

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
55233227 - 55234443
Intron Length:
1217

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TTG|GTAAGTTAA
5'SS Class:
strong_major
3'SS Sequence:
GTTTTTCTGACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CGCTGAA
U12 Branch Point Sequence:
TTTTTCTGACAG
Flanking Amino Acid:
ANAALLDIDFGTYPFVTSSN
Intron Amino Acid Position:
539

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
89.2
0.92
0.8
82
26.1
Major BPS
54.6
0.12
1.1
46.7
38.9
Major PPT
79.9
0.67
1
76.5
37.7
Minor 5ss
39.7
-1.2
2.8
45.9
43.7
Minor BPS
51.4
-0
1.9
65.14
42.5

Associated Gene:

Gene:
ADSS1
Ensembl Gene ID:
ENSAPLG00000027680
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000030819
55213421 - 55239954
26534