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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_55234599_55235722_F

Intron Information:

Intron Rank:
9
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
55234599 - 55235722
Intron Length:
1124

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAT|GTAGGTTTA
5'SS Class:
major
3'SS Sequence:
TGTCTTTTTGTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTCAG
U12 Branch Point Sequence:
ATACCATTATCT
Flanking Amino Acid:
IGAFPTEQINEIGDLLQSRG
Intron Amino Acid Position:
591

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76.4
0.62
1.1
77
34.4
Major BPS
76
0.65
1.5
85.7
34.9
Major PPT
84.7
0.78
0.7
80.8
31.2
Minor 5ss
44.8
-0.6
3.1
61.7
43.4
Minor BPS
54.5
0.22
1.9
74.66
41.2

Associated Gene:

Gene:
ADSS1
Ensembl Gene ID:
ENSAPLG00000027680
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000030819
55213421 - 55239954
26534