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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_55237998_55238494_F

Intron Information:

Intron Rank:
11
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
55237998 - 55238494
Intron Length:
497

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTATGCTAT
5'SS Class:
strong_major
3'SS Sequence:
TCTTCACCCACAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AACTAAA
U12 Branch Point Sequence:
AATTCTTCACCC
Flanking Amino Acid:
LGGKRIPYFPANQEILQKVE
Intron Amino Acid Position:
665

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.2
0.78
0.9
76.7
34.9
Major BPS
68.7
0.47
0.9
67.9
25
Major PPT
76.1
0.59
0.8
69.6
30
Minor 5ss
55.7
0.19
2.5
72.7
44.5
Minor BPS
53.8
0.1
1.8
66.21
39.3

Associated Gene:

Gene:
ADSS1
Ensembl Gene ID:
ENSAPLG00000027680
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000030819
55213421 - 55239954
26534