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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_55238645_55239464_F

Intron Information:

Intron Rank:
12
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
55238645 - 55239464
Intron Length:
820

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAATCTT
5'SS Class:
strong_major
3'SS Sequence:
TTTTCTTCCCTAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTAAT
U12 Branch Point Sequence:
AATCTTCTAATA
Flanking Amino Acid:
RCVENHVGVPVKWVGVGKSR
Intron Amino Acid Position:
715

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.8
0.89
0.9
84.2
33.9
Major BPS
94.5
1.11
0.6
92.2
14.6
Major PPT
83.4
0.75
0.7
77.7
31.1
Minor 5ss
39.5
-1.2
3.2
58.6
45.9
Minor BPS
49.8
-0
1.6
60.72
32.6

Associated Gene:

Gene:
ADSS1
Ensembl Gene ID:
ENSAPLG00000027680
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000030819
55213421 - 55239954
26534