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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_55253407_55253901_F

Intron Information:

Intron Rank:
1
Intron Class:
major-like
Intron Phase:
1
Intron Coordinates:
55253407 - 55253901
Intron Length:
495

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTTCAGGGT
5'SS Class:
weak_major
3'SS Sequence:
CATCTTTTCCAAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TACTTAT
U12 Branch Point Sequence:
ATCTACTTACTT
Flanking Amino Acid:
EGMASSGARGAVPPVGVSKA
Intron Amino Acid Position:
16

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
57.9
0.19
1.3
53.4
43.6
Major BPS
83.6
0.84
0.8
71.9
35.8
Major PPT
68.6
0.42
1
67
38
Minor 5ss
25.6
-2.8
3.6
39.1
46.2
Minor BPS
57.9
0.33
1.8
75.01
42.1

Associated Gene:

Gene:
SIVA1
Ensembl Gene ID:
ENSAPLG00000016312
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000017018
55253361 - 55254594
1234