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Intron Name: Anas_platyrhynchos_platyrhynchos_5_55254062_55254536_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

55254062 - 55254536

Intron Length:

475

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

TGA|GTAAGTGTC

5'SS Class:

major

3'SS Sequence:

TTTCTCCTCCTAG|T

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

TTTTTCT

U12 Branch Point Sequence:

TTTTTTTTTTCT

Flanking Amino Acid:

TVTCSLCSVIDYGDVGEQVL

Intron Amino Acid Position:

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

77.1

0.64

73.4

36.4

Major BPS

38.1

-0.7

4.3

71.7

44.6

Major PPT

80.6

0.69

0.7

73.9

31.2

Minor 5ss

38.5

-1.3

3.3

49.1

41.3

Minor BPS

45.5

-0.2

3.6

82.93

38.6

Associated Gene:

Gene:

SIVA1

Ensembl Gene ID:

ENSAPLG00000016312

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000039138

55252778 - 55254594

1817

ENSAPLT00000017018

55253361 - 55254594

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