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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_55273613_55278273_R

Intron Information:

Intron Rank:
11
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
55273613 - 55278273
Intron Length:
4661

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTACTTAAA
5'SS Class:
major
3'SS Sequence:
CTATTTTTTGTAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTCTAT
U12 Branch Point Sequence:
ATTTTTCTATTT
Flanking Amino Acid:
IVWQDVYEKKLVPPFKPQVT
Intron Amino Acid Position:
421

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77.9
0.66
1
76.2
34.5
Major BPS
73.8
0.59
1.3
72.8
43
Major PPT
84.3
0.77
0.7
80.8
31
Minor 5ss
34
-1.8
2.9
42.5
44.3
Minor BPS
50.4
0.09
1.8
74.15
37.3

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000016314
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000017042
55272740 - 55337060
64321