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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_55286019_55290316_R

Intron Information:

Intron Rank:
9
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
55286019 - 55290316
Intron Length:
4298

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTATGTTTA
5'SS Class:
strong_major
3'SS Sequence:
TGCCTTTCTACAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTAAA
U12 Branch Point Sequence:
GCTTTCTAAAGC
Flanking Amino Acid:
CGTPEYLAPEVLEDNDYGRA
Intron Amino Acid Position:
320

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
90.1
0.95
0.8
85.8
25.5
Major BPS
85.3
0.88
0.8
84.2
21.8
Major PPT
81.6
0.71
0.8
75.8
32.8
Minor 5ss
49.9
-0
2.4
66.7
44.7
Minor BPS
50.3
-0
2
61.92
43.9

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000016314
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000017042
55272740 - 55337060
64321