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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_55291822_55292548_R

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
55291822 - 55292548
Intron Length:
727

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAAGGGAA
5'SS Class:
strong_major
3'SS Sequence:
ATTGTTCTTGTAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATCTAAA
U12 Branch Point Sequence:
TGCAATCTAAAT
Flanking Amino Acid:
FVMEYANGGELFFHLSRERV
Intron Amino Acid Position:
235

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
90
0.94
0.8
78.3
31.1
Major BPS
76.5
0.66
0.8
75.9
24.9
Major PPT
79.6
0.67
0.8
74.4
35.8
Minor 5ss
28.5
-2.5
3.5
37.1
47.5
Minor BPS
44.3
-0.3
1.9
60.71
42.3

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000016314
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000017042
55272740 - 55337060
64321