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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_55294423_55294566_R

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
55294423 - 55294566
Intron Length:
144

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGAGTGGA
5'SS Class:
strong_major
3'SS Sequence:
GATTGTGTTTCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTGAT
U12 Branch Point Sequence:
TTCCTTCTGATT
Flanking Amino Acid:
ILKKEVIVAKDEVAHTLTEN
Intron Amino Acid Position:
190

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
90.5
0.95
0.8
77.5
32.8
Major BPS
91.3
1.03
0.7
79.6
35.6
Major PPT
73.9
0.54
1
69.5
45.7
Minor 5ss
26.6
-2.7
3
31.8
42.6
Minor BPS
48.7
-0
1.6
68.13
37.2

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000016314
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000017042
55272740 - 55337060
64321