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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_55306239_55336885_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
55306239 - 55336885
Intron Length:
30647

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAAGTGTC
5'SS Class:
strong_major
3'SS Sequence:
ATCCTTTTTCCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTGAT
U12 Branch Point Sequence:
ATTTTCTGATGA
Flanking Amino Acid:
IVKEGWLHKRGEYIKTWRPR
Intron Amino Acid Position:
16

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
97
1.11
0.7
88.7
23.8
Major BPS
91.3
1.03
0.7
79.6
35.6
Major PPT
84.5
0.78
0.8
76.6
36.9
Minor 5ss
37.2
-1.4
3.3
52
45.2
Minor BPS
49
-0
2
66.1
40.4

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000016314
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000017042
55272740 - 55337060
64321