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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_55417314_55417474_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
5UTR
Intron Coordinates:
55417314 - 55417474
Intron Length:
161

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGCTTTGT
5'SS Class:
major
3'SS Sequence:
TTCCCTCCCTCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CCCTCAG
U12 Branch Point Sequence:
TTCTTCTTCCCT
Flanking Amino Acid:
5UTR
Intron Amino Acid Position:
5UTR

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
72.2
0.52
1.1
67.9
39.8
Major BPS
48.4
-0.1
1.5
56.9
40.5
Major PPT
79
0.65
0.7
77
25
Minor 5ss
35.5
-1.6
3.1
50.3
45.9
Minor BPS
44.7
-0.3
3.6
78.66
44.1

Associated Gene:

Gene:
CEP170B
Ensembl Gene ID:
ENSAPLG00000016395
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000018142
55416964 - 55469302
52339