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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_55417585_55418233_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
5UTR
Intron Coordinates:
55417585 - 55418233
Intron Length:
649

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGTGGCCG
5'SS Class:
major
3'SS Sequence:
TTTTCATGTTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTAAT
U12 Branch Point Sequence:
TTTATTTTAATT
Flanking Amino Acid:
5UTR
Intron Amino Acid Position:
5UTR

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
74.2
0.57
1
55.7
42.9
Major BPS
99.5
1.23
0.5
98.2
4.2
Major PPT
83
0.74
0.9
81.6
35
Minor 5ss
31.7
-2.1
3.2
38.8
46.5
Minor BPS
76.1
0.9
1.1
87.86
31.1

Associated Gene:

Gene:
CEP170B
Ensembl Gene ID:
ENSAPLG00000016395
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000018142
55416964 - 55469302
52339
ENSAPLT00000017113
55416964 - 55469302
52339
ENSAPLT00000025239
55416964 - 55469302
52339
ENSAPLT00000024519
55416964 - 55469302
52339