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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_55418370_55429202_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
55418370 - 55429202
Intron Length:
10833

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAATGTGA
5'SS Class:
major
3'SS Sequence:
CTTTCGTTGCCAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTCTCAC
U12 Branch Point Sequence:
CTGCTCTCACGC
Flanking Amino Acid:
GRDDCELMLQSRSVDKQHAV
Intron Amino Acid Position:
36

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79
0.68
1
68.5
38.9
Major BPS
72.7
0.56
1
75
30.1
Major PPT
75.1
0.57
1
68.8
42
Minor 5ss
36.2
-1.6
3.2
47.7
47.7
Minor BPS
41
-0.7
2
46.88
42.7

Associated Gene:

Gene:
CEP170B
Ensembl Gene ID:
ENSAPLG00000016395
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000018142
55416964 - 55469302
52339
ENSAPLT00000017113
55416964 - 55469302
52339
ENSAPLT00000025239
55416964 - 55469302
52339
ENSAPLT00000024519
55416964 - 55469302
52339