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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_55432112_55434642_F

Intron Information:

Intron Rank:
4
Intron Class:
minor
Intron Phase:
1
Intron Coordinates:
55432112 - 55434642
Intron Length:
2531

Sequence Information:

Terminal Dinucleotides:
AT-AC
5'SS Sequence:
ACG|ATATCCTTC
5'SS Class:
strong_minor
3'SS Sequence:
ACAAGTTCTGTAC|A
3'SS Class:
strong_BPS
U2 Branch Point Sequence:
ATCTGAT
U12 Branch Point Sequence:
GTTTCCTTAACA
Flanking Amino Acid:
KLNDVIRFGYDSNMYVLEQI
Intron Amino Acid Position:
92

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
34.3
-0.9
3.4
48
43.6
Major BPS
82.5
0.81
0.8
71.4
36.6
Major PPT
37.1
-0.7
3.1
47.3
40.7
Minor 5ss
92.2
1.4
0.9
88.8
23.7
Minor BPS
91.5
1.3
0.8
92.6
26.7

Associated Gene:

Gene:
CEP170B
Ensembl Gene ID:
ENSAPLG00000016395
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000018142
55416964 - 55469302
52339
ENSAPLT00000017113
55416964 - 55469302
52339
ENSAPLT00000025239
55416964 - 55469302
52339
ENSAPLT00000024519
55416964 - 55469302
52339