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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_55434702_55436025_F

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
55434702 - 55436025
Intron Length:
1324

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGGGGA
5'SS Class:
strong_major
3'SS Sequence:
CATGTCCCTGCAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TCCTCAT
U12 Branch Point Sequence:
CTGTCCTCATGT
Flanking Amino Acid:
QHKVPEEALKHEKYTSQLQM
Intron Amino Acid Position:
112

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88.5
0.91
0.9
73.1
38.2
Major BPS
82.3
0.8
0.9
81.8
30.8
Major PPT
74
0.54
0.9
66.4
35.3
Minor 5ss
28.6
-2.5
3.5
38
46.8
Minor BPS
47.9
-0
2.1
67.69
48.8

Associated Gene:

Gene:
CEP170B
Ensembl Gene ID:
ENSAPLG00000016395
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000025239
55416964 - 55469302
52339
ENSAPLT00000024519
55416964 - 55469302
52339
ENSAPLT00000018142
55416964 - 55469302
52339
ENSAPLT00000017113
55416964 - 55469302
52339