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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_55436165_55443867_F

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
55436165 - 55443867
Intron Length:
7703

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTACTTGCT
5'SS Class:
major
3'SS Sequence:
ATCTTCTTCCTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TGTTTAT
U12 Branch Point Sequence:
AGTTGTTTATCT
Flanking Amino Acid:
LEKGERKPITETNTYRTPLY
Intron Amino Acid Position:
158

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76.5
0.63
1.1
71.8
38
Major BPS
81.3
0.78
1.1
71.7
44.6
Major PPT
76.7
0.6
0.8
69.7
36
Minor 5ss
34.3
-1.8
3.4
51
45.4
Minor BPS
54.1
0.21
2
74.8
42.2

Associated Gene:

Gene:
CEP170B
Ensembl Gene ID:
ENSAPLG00000016395
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000024519
55416964 - 55469302
52339
ENSAPLT00000018142
55416964 - 55469302
52339
ENSAPLT00000017113
55416964 - 55469302
52339
ENSAPLT00000025239
55416964 - 55469302
52339