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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_55443970_55445098_F

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
55443970 - 55445098
Intron Length:
1129

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGGGAG
5'SS Class:
strong_major
3'SS Sequence:
TTTCCTTTTGTAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTTAAG
U12 Branch Point Sequence:
TTTTTTTTTCCT
Flanking Amino Acid:
EDRRQEEHYSDRSKEIAQHE
Intron Amino Acid Position:
192

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88.5
0.91
0.9
73
38.2
Major BPS
66.8
0.42
1.5
75.7
36.5
Major PPT
88.1
0.86
0.6
84.7
22.9
Minor 5ss
28.6
-2.5
3.5
36.8
47.7
Minor BPS
45.5
-0.2
3.6
82.93
38.6

Associated Gene:

Gene:
CEP170B
Ensembl Gene ID:
ENSAPLG00000016395
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000018142
55416964 - 55469302
52339
ENSAPLT00000017113
55416964 - 55469302
52339
ENSAPLT00000025239
55416964 - 55469302
52339
ENSAPLT00000024519
55416964 - 55469302
52339