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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_55445576_55447911_F

Intron Information:

Intron Rank:
9
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
55445576 - 55447911
Intron Length:
2336

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGAGTGAA
5'SS Class:
strong_major
3'SS Sequence:
CTCCCGATGACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TCCCGAT
U12 Branch Point Sequence:
TTCTCCCGATGA
Flanking Amino Acid:
DLPVHVRTLKGSRSLTESSC
Intron Amino Acid Position:
351

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
92
0.99
0.7
82.8
23.2
Major BPS
56.1
0.15
1.3
54.3
42.9
Major PPT
62.4
0.28
1
56.8
37.5
Minor 5ss
26.6
-2.7
3
30.8
43.1
Minor BPS
43.9
-0.4
2.2
60.79
45

Associated Gene:

Gene:
CEP170B
Ensembl Gene ID:
ENSAPLG00000016395
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000024519
55416964 - 55469302
52339
ENSAPLT00000018142
55416964 - 55469302
52339
ENSAPLT00000025239
55416964 - 55469302
52339