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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_55447975_55448795_F

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
55447975 - 55448795
Intron Length:
821

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTTTGTTTG
5'SS Class:
major
3'SS Sequence:
GACTTGTTTCCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AAGTCAA
U12 Branch Point Sequence:
CATAAGTCAAAT
Flanking Amino Acid:
PSHPFPSPKKGNRHEDGTQS
Intron Amino Acid Position:
372

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76.3
0.62
1.1
72.6
39.2
Major BPS
59
0.23
1.1
61.4
36.2
Major PPT
74.9
0.56
1
65.1
45.3
Minor 5ss
46.3
-0.4
2.4
58.6
46
Minor BPS
39.8
-0.7
2.3
56.83
44.7

Associated Gene:

Gene:
CEP170B
Ensembl Gene ID:
ENSAPLG00000016395
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000025239
55416964 - 55469302
52339
ENSAPLT00000024519
55416964 - 55469302
52339
ENSAPLT00000018142
55416964 - 55469302
52339