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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_55452110_55453557_F

Intron Information:

Intron Rank:
11
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
55452110 - 55453557
Intron Length:
1448

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGTCTC
5'SS Class:
strong_major
3'SS Sequence:
TAACTCCCTTCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTTGAC
U12 Branch Point Sequence:
ATCCACTTAACT
Flanking Amino Acid:
SVSGQADGGTEGGVATKPGE
Intron Amino Acid Position:
705

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
95.8
1.08
0.7
85.3
32.2
Major BPS
77.7
0.69
0.9
69.1
37.9
Major PPT
74.8
0.56
0.9
70.8
35.5
Minor 5ss
38.8
-1.3
3
52.9
44.3
Minor BPS
69.2
0.68
1.5
81.26
39.8

Associated Gene:

Gene:
CEP170B
Ensembl Gene ID:
ENSAPLG00000016395
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000018142
55416964 - 55469302
52339
ENSAPLT00000017113
55416964 - 55469302
52339
ENSAPLT00000025239
55416964 - 55469302
52339
ENSAPLT00000024519
55416964 - 55469302
52339